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I have had a dialog with Alex regarding controller compatibility. You may look at the thread http://stablebit.com/Contact/Lookup/5118503
My two PCI controllers (Highpoint RR2320 and Promise SATA300 TX4) do not have the necessary capability in their driver. Also for reasons other than this I am contemplating replacing the controller cards with 2 8ch SATA non-RAID controllers. Supermicro, among others sell these cards for less than $100, but there is no evidence that the chipset will handle proper SMART communication.
Alex has verified that SiL 3132 and 3512 chips are OK and is prepared to do some more testing.
Has anyone experience with controller cards that play with BitFlock.